Contact

Questions and feedback: odias@merlin-sysbio.org

Issues and features: support@merlin-sysbio.org

How to cite merlin

João Capela, Davide Lagoa, Ruben Rodrigues, Emanuel Cunha, Fernando Cruz, Ana Barbosa, José Bastos, Diogo Lima, Eugénio C Ferreira, Miguel Rocha, Oscar Dias, merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models, Nucleic Acids Research, 2022;, gkac459, https://doi.org/10.1093/nar/gkac459

Related work

Dias, O., Rocha, M., Ferreira, E.C. and Rocha, I. (2015) Reconstructing genome-scale metabolic models with merlin. Nucleic Acids Res., 10.1093/nar/gkv294.

Cruz, F., Lagoa, D., Mendes, J. et al. SamPler – a novel method for selecting parameters for gene functional annotation routines. BMC Bioinformatics 20, 454 (2019). 10.1186/s12859-019-3038-4

Dias, O., Gomes, D., Vilaca, P., Cardoso, J., Rocha, M., Ferreira, E., & Rocha, I. (2016). Genome-wide Semi-automated Annotation of Transporter Systems. IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM, (1), 1–1. 10.1109/TCBB.2016.2527647

Dias O., Rocha M., Ferreira E.C., Rocha I. (2018) Reconstructing High-Quality Large-Scale Metabolic Models with merlin. In: Fondi M. (eds) Metabolic Network Reconstruction and Modeling. Methods in Molecular Biology, vol 1716. Humana Press, New York, NY. 10.1007/978-1-4939-7528-0_1

Supported by

Centre of Biological Engineering

School of Engineering of the University of Minho

Acknowledgements

This project was supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469/2013 unit and COMPETE 2020 (POCI-01-0145-FEDER-006684) and MIT-Pt/BS-BB/0082/2008 (FCOMP-01-0124-FEDER-008433).

Fundação para Ciência e a Tecnologia

COMPETE

merlin's developers acknowledge PEM Metabolic Engineering Platform, project number 23060, co-funded by the Programa Operacional Regional do Norte (ON.2 O Novo Norte), QREN, FEDER.

Programa Operacional Regional do Norte