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How to cite merlin

João Capela, Davide Lagoa, Ruben Rodrigues, Emanuel Cunha, Fernando Cruz, Ana Barbosa, José Bastos, Diogo Lima, Eugénio C Ferreira, Miguel Rocha, Oscar Dias, merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models, Nucleic Acids Research, 2022;, gkac459,

Related work

Dias, O., Rocha, M., Ferreira, E.C. and Rocha, I. (2015) Reconstructing genome-scale metabolic models with merlin. Nucleic Acids Res., 10.1093/nar/gkv294.

Cruz, F., Lagoa, D., Mendes, J. et al. SamPler – a novel method for selecting parameters for gene functional annotation routines. BMC Bioinformatics 20, 454 (2019). 10.1186/s12859-019-3038-4

Dias, O., Gomes, D., Vilaca, P., Cardoso, J., Rocha, M., Ferreira, E., & Rocha, I. (2016). Genome-wide Semi-automated Annotation of Transporter Systems. IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM, (1), 1–1. 10.1109/TCBB.2016.2527647

Dias O., Rocha M., Ferreira E.C., Rocha I. (2018) Reconstructing High-Quality Large-Scale Metabolic Models with merlin. In: Fondi M. (eds) Metabolic Network Reconstruction and Modeling. Methods in Molecular Biology, vol 1716. Humana Press, New York, NY. 10.1007/978-1-4939-7528-0_1

Supported by


This project was supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469/2013 unit and COMPETE 2020 (POCI-01-0145-FEDER-006684) and MIT-Pt/BS-BB/0082/2008 (FCOMP-01-0124-FEDER-008433).

merlin's developers acknowledge PEM Metabolic Engineering Platform, project number 23060, co-funded by the Programa Operacional Regional do Norte (ON.2 O Novo Norte), QREN, FEDER.