From merlin
Jump to: navigation, search

Latest news

S2M2 - Summer School in Metabolic Modeling (29 June - 3 July 2020) - 2nd Edition!!!

BioSystems group is organizing for the second time a 5-day course on metabolic modelling – Summer School in Metabolic Modeling. The course will cover the full process from model reconstruction to phenotype prediction using genome-scale metabolic models.
The focus of this course will be on user-friendly tools for genome-scale metabolic model reconstruction (merlin) and simulation (Optflux) as to introduce alternatives to improve those models with omics data integration.
See more at http://s2m2.bio.di.uminho.pt/

S2m2 2020.png

A new tutorial is now available for merlin

We have implemented an extensive hands-on tutorial for merlin, which follows every step towards the reconstruction of a genome-scale metabolic model.
To access it, please click on the tutorial section on this website's upper navigation bar.


merlin is a simple, graphical and user-oriented solution for the reconstruction of genome-scale metabolic models.

It will guide you along the model reconstruction, providing several tools that help to improve and curate the model throughout the whole process.


Ongoing work

We are currently working on the following features and will release a new version of merlin in the near future:

  • Integration of modelSEED metabolic data.
  • Integration of BIGG metabolic data.
  • Development of a plugin towards the integration of regulatory data.

Getting started