Downloads

Please cite using

Dias, O., Rocha, M., Ferreira, E.C. and Rocha, I. (2015) Reconstructing genome-scale metabolic models with merlin. Nucleic Acids Res., 10.1093/nar/gkv294.

Dias, O., Gomes, D., Vilaca, P., Cardoso, J., Rocha, M., Ferreira, E., & Rocha, I. (2016). Genome-wide Semi-automated Annotation of Transporter Systems. IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM, (1), 1–1. http://doi.org/10.1109/TCBB.2016.2527647

Downloads

merlin is available for download in a single multi-platform version.

• merlin 3.6.2 beta is now available for download.
  • merlin.zip

System requirements

The current version of merlin requires:

• Processor: Reasonably powerful x64 hardware. Any recent Intel or AMD processor should do.

• Memory: 1GB memory (most operations use less than 1GB, however the local alignments may take up to 3GB)

• OS: Windows (XP or later), Linux (Tested on Ubuntu Precise Pangolin)

• Database:
  • H2: embedded database available
  • MySQL: alternatively a MySQL Server can be used

• If you want to upload your previous workspace to the new version of merlin, please contact us at:
  • support@merlin-sysbio.org

Changelog

• Any bugs or suggestions please email us at:
  • support@merlin-sysbio.org
• Latest update: 2018-05-11 NEW RELEASE 3.6.2
  • New features:
    • SBML level 3 writer included
  • Debuging:
    • Bug in SBML level 2 writer fixed
    • Drains removal,creation and others debugged
    • Decimal boundaries insertion correction
• Changelog history
  • changelog

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