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(Getting started)
(Getting started)
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== Getting started ==
== Getting started ==
* [https://www.merlin-sysbio.org/index.php?title=tutorial How to use merlin]
* [https://www.merlin-sysbio.org/index.php?title=tutorial How to use merlin]
* [https://merlin-sysbio.org/index.php?title=downloads Downloading merlin]
* [https://www.merlin-sysbio.org/index.php?title=downloads Downloading merlin]

Revision as of 11:06, 30 April 2018



tutorial available

A tutorial on Reconstructing high-quality large-scale metabolic models with merlin was published in:
Metabolic Network Reconstruction and Modeling: Methods and Protocols, Vol. Methods in Molecular Biology 1716, Springer, 2018. ISBN: 978-1-4939-7528-0, 1-36

merlin is now published

Dias, O., Rocha, M., Ferreira, E.C. and Rocha, I. (2015) Reconstructing genome-scale metabolic models with merlin. Nucleic Acids Res., 10.1093/nar/gkv294.

TRIAGE is also published:

Dias, O., Gomes, D., Vilaca, P., Cardoso, J., Rocha, M., Ferreira, E., & Rocha, I. (2016). Genome-wide Semi-automated Annotation of Transporter Systems. IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM, (1), 1–1. http://doi.org/10.1109/TCBB.2016.2527647


merlin is a simple, graphical and user-oriented solution for the reconstruction of genome-scale metabolic models.

It will guide you along the model reconstruction, providing several tools that help to improve and curate the model throughout the whole process.


Getting started