Difference between revisions of "Home"

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<gallery mode="packed-overlay">
<gallery mode="packed-overlay">
Image:Genes.JPG|''[[genes view]]''
Image:Genes.JPG|''model genes panel''
Image:Proteins.JPG|''[[proteins view]]''
Image:Proteins.JPG|''model proteins panel''
Image:metabolites.JPG|''[[metabolites view]]''
Image:metabolites.JPG|''model metabolites panel''
Image:reactions.png|''[[reactions panel]]''
Image:reactions.png|''model reactions panel''
Image:pathway.JPG|''[[pathways panel]]''
Image:pathway.JPG|''model pathways panel''
Image:enzymes.png|''[[enzymes annotation panel]]''
Image:enzymes.png|''enzymes annotation panel''
Image:transporters.JPG|''[[transporters annotation panel]]''
Image:transporters.JPG|''transporters annotation panel''
Image:compartments.JPG|''[[comparmtents annotation panel]]''
Image:compartments.JPG|''comparmtents annotation panel''

Revision as of 21:10, 28 April 2018



tutorial available

A tutorial on Reconstructing high-quality large-scale metabolic models with merlin was published in:
Metabolic Network Reconstruction and Modeling: Methods and Protocols, Vol. Methods in Molecular Biology 1716, Springer, 2018. ISBN: 978-1-4939-7528-0, 1-36

merlin is now published

Dias, O., Rocha, M., Ferreira, E.C. and Rocha, I. (2015) Reconstructing genome-scale metabolic models with merlin. Nucleic Acids Res., 10.1093/nar/gkv294.

TRIAGE is also published:

Dias, O., Gomes, D., Vilaca, P., Cardoso, J., Rocha, M., Ferreira, E., & Rocha, I. (2016). Genome-wide Semi-automated Annotation of Transporter Systems. IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM, (1), 1–1. http://doi.org/10.1109/TCBB.2016.2527647


merlin is a simple, graphical and user-oriented solution for the reconstruction of genome-scale metabolic models.

It will guide you along the model reconstruction, providing several tools that help to improve and curate the model throughout the whole process.


Getting started