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Latest news

S2M2 - Summer School in Metabolic Modeling (29 June - 3 July 2020) - 2nd Edition!!!

BioSystems group is organizing for the second time a 5-day course on metabolic modelling – Summer School in Metabolic Modeling. The course will cover the full process from model reconstruction to phenotype prediction using genome-scale metabolic models.
The focus of this course will be on user-friendly tools for genome-scale metabolic model reconstruction (merlin) and simulation (Optflux) as to introduce alternatives to improve those models with omics data integration.
See more at http://s2m2.bio.di.uminho.pt/


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A new tutorial is now available for merlin

We have implemented an extensive hands-on tutorial for merlin, which follows every step towards the reconstruction of a genome-scale metabolic model.
To access it, please click on the tutorial section on this website's upper navigation bar.


merlin

merlin is a simple, graphical and user-oriented solution for the reconstruction of genome-scale metabolic models.

It will guide you along the model reconstruction, providing several tools that help to improve and curate the model throughout the whole process.

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Ongoing work

We are currently working on the following features and will release a new version of merlin in the near future:

  • Integration of modelSEED metabolic data.
  • Integration of BIGG metabolic data.
  • Development of a plugin towards the integration of regulatory data.


Getting started