New tutorial

We have implemented an extensive hands-on tutorial for merlin, which follows every step towards the reconstruction of a genome-scale metabolic model. Take a look at the documentation section!

Submitted on: 17/02/2021

Version 4

We are proud to announce that the latest version of merlin will be released on the 5th of November 2019, available for download in this website.

Submitted on: 10/02/2020

S2M2 - Summer School in Metabolic Modeling

BioSystems group is organizing a 5-day course on metabolic modelling – Summer School in Metabolic Modeling. The course will cover the full process from model reconstruction to phenotype prediction using genome-scale metabolic models. The focus of the course will be on user-friendly tools for metabolic model reconstruction (merlin) and simulation (Optflux) and to introduce experimental procedures to improve those models. See more at

Submitted on: 3/03/2019